medical image dataset
+39+26+56+67+20+15+22Coarse-grainedobjectFine-grainedobjectTexturePathologyUltrasounddatasetexpansionAuto-createddatawithnewinformationSmalldatasetExpandeddatasetcatdog
The power of DNNs relies heavily on the quantity and quality of training data. However, collecting and annotating data on a large scale is often expensive and timeconsuming. To address this issue, we explore a new task, termed dataset expansion, aimed at expanding a ready-to-use small dataset by automatically creating new labeled samples. To this end, we present a Guided Imagination Framework (GIF) that leverages cutting-edge generative models like DALL-E2 and Stable Diffusion (SD) to "imagine" and create informative new data from the input seed data. Specifically, GIF conducts data imagination by optimizing the latent features of the seed data in the semantically meaningful space of the prior model, resulting in the creation of photo-realistic images with new content. To guide the imagination towards creating informative samples for model training, we introduce two key criteria, i.e., class-maintained information boosting and sample diversity promotion. These criteria are verified to be essential for effective dataset expansion: GIF-SD obtains 13.5% higher model accuracy on natural image datasets than unguided expansion with SD. With these essential criteria, GIF successfully expands small datasets in various scenarios, boosting model accuracy by 36.9% on average over six natural image datasets and by 13.5% on average over three medical datasets.
Medical Imaging Complexity and its Effects on GAN Performance
Cagas, William, Ko, Chan, Hsiao, Blake, Grandhi, Shryuk, Bhattacharya, Rishi, Zhu, Kevin, Lam, Michael
The proliferation of machine learning models in diverse clinical applications has led to a growing need for high-fidelity, medical image training data. Such data is often scarce due to cost constraints and privacy concerns. Alleviating this burden, medical image synthesis via generative adversarial networks (GANs) emerged as a powerful method for synthetically generating photo-realistic images based on existing sets of real medical images. However, the exact image set size required to efficiently train such a GAN is unclear. In this work, we experimentally establish benchmarks that measure the relationship between a sample dataset size and the fidelity of the generated images, given the dataset's distribution of image complexities. We analyze statistical metrics based on delentropy, an image complexity measure rooted in Shannon's entropy in information theory. For our pipeline, we conduct experiments with two state-of-the-art GANs, StyleGAN 3 and SPADE-GAN, trained on multiple medical imaging datasets with variable sample sizes. Across both GANs, general performance improved with increasing training set size but suffered with increasing complexity.
Pre-processing and Compression: Understanding Hidden Representation Refinement Across Imaging Domains via Intrinsic Dimension
Konz, Nicholas, Mazurowski, Maciej A.
In recent years, there has been interest in how geometric properties such as intrinsic dimension (ID) of a neural network's hidden representations change through its layers, and how such properties are predictive of important model behavior such as generalization ability. However, evidence has begun to emerge that such behavior can change significantly depending on the domain of the network's training data, such as natural versus medical images. Here, we further this inquiry by exploring how the ID of a network's learned representations changes through its layers, in essence, characterizing how the network successively refines the information content of input data to be used for predictions. Analyzing eleven natural and medical image datasets across six network architectures, we find that how ID changes through the network differs noticeably between natural and medical image models. Specifically, medical image models peak in representation ID earlier in the network, implying a difference in the image features and their abstractness that are typically used for downstream tasks in these domains. Additionally, we discover a strong correlation of this peak representation ID with the ID of the data in its input space, implying that the intrinsic information content of a model's learned representations is guided by that of the data it was trained on. Overall, our findings emphasize notable discrepancies in network behavior between natural and non-natural imaging domains regarding hidden representation information content, and provide further insights into how a network's learned features are shaped by its training data.
The Effect of Intrinsic Dataset Properties on Generalization: Unraveling Learning Differences Between Natural and Medical Images
Konz, Nicholas, Mazurowski, Maciej A.
This paper investigates discrepancies in how neural networks learn from different imaging domains, which are commonly overlooked when adopting computer vision techniques from the domain of natural images to other specialized domains such as medical images. Recent works have found that the generalization error of a trained network typically increases with the intrinsic dimension ($d_{data}$) of its training set. Yet, the steepness of this relationship varies significantly between medical (radiological) and natural imaging domains, with no existing theoretical explanation. We address this gap in knowledge by establishing and empirically validating a generalization scaling law with respect to $d_{data}$, and propose that the substantial scaling discrepancy between the two considered domains may be at least partially attributed to the higher intrinsic "label sharpness" ($K_F$) of medical imaging datasets, a metric which we propose. Next, we demonstrate an additional benefit of measuring the label sharpness of a training set: it is negatively correlated with the trained model's adversarial robustness, which notably leads to models for medical images having a substantially higher vulnerability to adversarial attack. Finally, we extend our $d_{data}$ formalism to the related metric of learned representation intrinsic dimension ($d_{repr}$), derive a generalization scaling law with respect to $d_{repr}$, and show that $d_{data}$ serves as an upper bound for $d_{repr}$. Our theoretical results are supported by thorough experiments with six models and eleven natural and medical imaging datasets over a range of training set sizes. Our findings offer insights into the influence of intrinsic dataset properties on generalization, representation learning, and robustness in deep neural networks.
Expanding Small-Scale Datasets with Guided Imagination
Zhang, Yifan, Zhou, Daquan, Hooi, Bryan, Wang, Kai, Feng, Jiashi
The power of DNNs relies heavily on the quantity and quality of training data. However, collecting and annotating data on a large scale is often expensive and time-consuming. To address this issue, we explore a new task, termed dataset expansion, aimed at expanding a ready-to-use small dataset by automatically creating new labeled samples. To this end, we present a Guided Imagination Framework (GIF) that leverages cutting-edge generative models like DALL-E2 and Stable Diffusion (SD) to "imagine" and create informative new data from the input seed data. Specifically, GIF conducts data imagination by optimizing the latent features of the seed data in the semantically meaningful space of the prior model, resulting in the creation of photo-realistic images with new content. To guide the imagination towards creating informative samples for model training, we introduce two key criteria, i.e., class-maintained information boosting and sample diversity promotion. These criteria are verified to be essential for effective dataset expansion: GIF-SD obtains 13.5% higher model accuracy on natural image datasets than unguided expansion with SD. With these essential criteria, GIF successfully expands small datasets in various scenarios, boosting model accuracy by 36.9% on average over six natural image datasets and by 13.5% on average over three medical datasets. The source code is available at https://github.com/Vanint/DatasetExpansion.
Understanding Transfer Learning for Medical Imaging
ImageNet pre-training) is a common practice in deep learning where a pre-trained network is fine-tuned on a new dataset/task. This practice is implicitly justified by feature-reuse where features learned from ImageNet are beneficial to other datasets/tasks. This paper [1] evaluates this justification on medical images datasets. The paper concludes that (i) transfer learning does not significantly help performance, (ii) smaller, simpler convolutional architectures perform comparably to standard ImageNet models, and (iii) there are feature-independent, and not feature-reuse, benefits to pre-training, i.e., speed convergence. These three differences question the idea of feature-reuse.
A Systematic Collection of Medical Image Datasets for Deep Learning
The astounding success made by artificial intelligence (AI) in healthcare and other fields proves that AI can achieve human-like performance. However, success always comes with challenges. Deep learning algorithms are data-dependent and require large datasets for training. The lack of data in the medical imaging field creates a bottleneck for the application of deep learning to medical image analysis. Medical image acquisition, annotation, and analysis are costly, and their usage is constrained by ethical restrictions.